Publication AI-Enhanced Sensemaking: Exploring the Design of a Generative AI-Based Assistant to Support Genetic Professionals Angela Mastrianni, Hope Twede, Aleksandra Sarcevic, Jeremiah Wander, C. Austin-Tse, Scott Saponas, Heidi L. Rehm, A. M. Conard, Amanda K. Hall ACM Transactions on Interactive Intelligent Systems | August 2025
Publication Insights into a radiology-specialised multimodal large language model with sparse autoencoders Kenza Bouzid, Shruthi Bannur, Felix Meissen, Daniel Coelho de Castro, Anton Schwaighofer, Javier Alvarez-Valle, Stephanie Hyland Actionable Interpretability Workshop – ICML 2025 | July 2025 Project
Publication Designing with Multi-Agent Generative AI: Insights from Industry Early Adopters Suchismita Naik, Austin L. Toombs, Amanda Snellinger, Scott Saponas, Amanda K. Hall DIS’25:Proceedings of the 2025 ACM Designing Interactive Systems Conference | July 2025
Publication Representation Learning Methods for Single-Cell Microscopy are Confounded by Background Cells Arushi Gupta, Alan Moses, Alex Lu June 2025 bioRxiv | June 2025 Github
Publication PadChest-GR: A Bilingual Chest X-ray Dataset for Grounded Radiology Report Generation Daniel Coelho de Castro, Aurelia Bustos, Shruthi Bannur, Stephanie Hyland, Kenza Bouzid, Maria Teodora Wetscherek, Maria Dolores Sánchez-Valverde, Lara Jaques-Pérez, Lourdes Pérez-Rodríguez, Kenji Takeda, José María Salinas-Serrano, Javier Alvarez-Valle, Joaquín Galant-Herrero, Antonio Pertusa NEJM AI | June 2025, Vol 2(7) Access Project
Publication Exploring Early Adopters’ Use of AI Driven Multi-Agent Systems to Inform Human-Agent Interaction Design: Insights from Industry Practice Suchismita Naik, Amanda Snellinger, Austin L. Toombs, Scott Saponas, Amanda K. Hall CHI 2025 | April 2025
Publication Causal integration of chemical structures improves representations of microscopy images for morphological profiling Yemin Yu, Neil Tenenholtz, Lester Mackey, Ying Wei, David Alvarez-Melis, Ava P. Amini, Alex Lu April 2025 arXiv | April 2025 Github
Publication Imaging Transformer for MRI Denoising: a Scalable Model Architecture that enables SNR<<1 Imaging Hui Xue, Sarah M. Hooper, Rhodri H. Davies, T. Treibel, Iain Pierce, John Stairs, Joseph Naegele, Charlotte Manisty, James C. Moon, A. Campbell-Washburn, Peter Kellman, Michael Hansen April 2025 arXiv | April 2025 Project
Publication Toward deep learning sequence–structure co-generation for protein design Chentong Wang, Sarah Alamdari, Carles Domingo-Enrich, Ava P. Amini, Kevin Kaichuang Yang Current Opinion in Structural Biology | March 2025
Publication Consequences of training data composition for deep learning models in single-cell biology Ajay Nadig, Akshaya Thoutam, Madeline Hughes, Anay Gupta, Andrew W. Navia, Nicolo Fusi, Srivatsan Raghavan, Peter S. Winter, Ava P. Amini, Lorin Crawford bioRxiv | February 2025 Project
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